Selected Publications

  • Seneviratne, C.J., Suriyanarayanan, T., Swarup, S., Chia, K.H.B., Nagarajan, N., and Zhang, C. (2017). Transcriptomics Analysis Reveals Putative Genes Involved in Biofilm Formation and Biofilm-associated Drug Resistance of Enterococcus faecalis. Journal of Endodontics 6, 949-955.

  • Ling, H., Foo, J.L., Saxena, G., Swarup, S., and Chang, M.W. (2017). Drug Targeting of the Human Microbiome. Systems Biology 6.

  • Keogh, D., Lam, L.N., Doyle, L., Matysik, A., Pavagadhi, S., Umashankar, S., Dale, J.L., Boothroyd, C.B., Dunny, G.M., Swarup, S., Williams, R.B.H, Marsili, E., Kline, K. (2017). Extracellular Electron Transfer Powers Enterococcus faecalis Biofilm Metabolism. bioRxiv, 130146.

  • Chua, S.L., Ding, Y., Liu, Y., Cai, Z., Zhou, J., Swarup, S., Drautz-Moses, D.I., Schuster, S.C., Kjelleberg, S., and Givskov, M. (2016). Reactive oxygen species drive evolution of pro-biofilm variants in pathogens by modulating cyclic-di-GMP levels. Open Biology 6, 160162.

  • Fazi S, Bandla A, Pizzetti I, and Swarup S (2016). Microbial biofilms as one of the key elements in modulating ecohydrological processes in both natural and urban water corridors. Ecohydrology & Hydrobiology 16,33-38 .

  • Rai A, Umashankar S, Lim BK, Rai M, Bing JAS, and Swarup S (2016). Coordinate Regulation of Metabolites Glycosylation and Stress Hormones Biosynthesis by TT8 in Arabidopsis. Plant Physiology, 171, 2499-2515.

  • Suriyanarayanan T, Periasamy S, Lin M-H, Ishihama Y, and Swarup S (2016). Flagellin FliC Phosphorylation Affects Type 2 Protease Secretion and Biofilm Dispersal in Pseudomonas aeruginosa PAO1. PLoS ONE 11(10): e0164155. doi:10.1371/journal.pone.0164155

  • Saxena G, Marzinelli EM, Naing NN, He Z, Liang Y, Tom L, Ping H, Josh, UM, Reuben S, Mynampati KC, Mishra S, Umashankar S, Mitra S, Zhou J, Andersen G, Kjelleberg S, and Swarup S (2015). Ecogenomics reveals metals and land-use pressures on microbial communities in the waterways of a megacity. Environmental Science & Technology 49, 1462-1471.

  • Mynampati KC, Lee YJ, Wijdeveld A, Reuben S, Lakshminarayanan S, Kjelleberg S , and Swarup S (2015). RhizoFlowCell system reveals early effects of micropollutants on aquatic plant rhizosphere. Environmental Pollution 207, 205-210.

  • Patkar RN, Benke PI, Qu Z, Constance Chen YY, Yang, F, Swarup, S, and Naqvi NI (2015). A fungal monooxygenase-derived jasmonate attenuates host innate immunity. Nature Chemical Biology 11, 733-740.

  • Ravichandran A, Ramachandran M, Suriyanarayanan T, Wong CC, Swarup S (2015). Global Regulator MorA Affects Virulence-Associated Protease Secretion in Pseudomonas aeruginosa PAO1. PLoS ONE 10,0123805.

  • Benke PI, Vinay Kumar MCS, Pan D, and Swarup S (2015). A mass spectrometry-based unique fragment approach for the identification of microcystins. The Analyst 140,1198-206.

  • Mishra S, Lee WA, Hooijer A, Reuben S, Sudiana IM, Idris A, and Swarup S (2014). Microbial and metabolic profiling reveal strong influence of water table and land-use patterns on classification of degraded tropical peatlands. Biogeosciences 11, 1727-1741.

  • Reuben S, Banas K, Banas A, and Swarup S (2014). Combination of synchrotron radiation-based Fourier transforms infrared microspectroscopy and confocal laser scanning microscopy to understand spatial heterogeneity in aquatic multispecies biofilms. Water Research 64, 123-133.

  • Reuben S, Rai A, Pillai, BV, Rodrigues A, and Swarup S (2013). A bacterial quercetin oxidoreductase QuoA-mediated perturbation in the phenylpropanoid metabolic network increases lignification with a concomitant decrease in phenolamides in Arabidopsis. Journal of Experimental Botany 64, 5183-5194.

  • Nagarajan K, Loh K-C, Swarup S (2013). Bioinformatics and molecular biology for the quantification of closely related bacteria. Applied Microbiology Biotechnology 97,6489-6502.

  • Reuben S, Chua CL, Fam KD, Thian ZY, Kang MK, and Swarup S (2012). Bacterial diversity on different surfaces in urban freshwater. Water Science and Technology 65, 1869-1874.

  • Qian C, Wong CC, Swarup S, Chiam K-H (2013).Bacterial Tethering Analysis Reveals a "Run-Reverse-Turn" Mechanism for Pseudomonas Species Motility. Applied Environmental Microbiology 79,4734-4743.

  • Zhang WC, Shyh-Chang N, Yang H, Rai A, Umashankar S, Ma S, Soh BS, Sun LL, Tai BC, Nga ME, Bhakoo KK, Jayapal SR, Nichane M, Yu Q, Ahmed DA, Tan C, Sing WP, Tam J, Thirugananam A, Noghabi MS, Pang YH, Ang HS, Mitchell W, Robson P, Kaldis P, Soo RA, Swarup S, Lim EH, and Lim B (2012) Glycine decarboxylase activity drives non-small cell lung cancer tumor-initiating cells and tumorigenesis. Cell 148, 259-272.